Macs in Chemistry

Insanely Great Science

Computational Chemistry Freeware

 

I recently came across this brilliant collection of software from Michel Petitjean

  • ARMS: Spatial Alignment with the RMS (Root Mean Square) method. (fixed pairwise correspondence)
  • ASV: Analytical calculation of van der Waals surfaces and volumes. (or any union of spheres)
  • CCCPP: Computes Cavites, Channels, Pores and Pockets in proteins.
  • CSR: The Combined SDM/RMS Algorithm for spatial alignment of two molecules. (pairwise correspondence computed)
  • CYL: Minimal radius enclosing cylinder. Minimal radius circumscribed cylinder.
  • DIVCF: Selects by clustering major conformations of a molecule in a set of its conformers.
  • DOG: Docking Geometrically two molecules. (fixed pairwise correspondence)
  • GRD: Computation of the Radius and Diameter of a molecular graph. (computes also the topological shape index)
  • MCG: Optimal Partition (classification): numerical variables and non-euclidean spaces. The number of classes is computed.
  • POP: Optimal Partition (classification): categorical variables. The number of classes is computed.
  • POSE: Computes the RMSD between two ligand poses. No rotation translation is performed.
  • QCM: Quantitative Chirality Measure of a conformer (graph automorphisms enumeration included)
  • RADI: Computation of the Radius and Diameter of a spatial set. (computes also various other geometrical parameters)
  • VIRAPOPS: A forward simulator dedicated to rapidly evolved viral populations.

Binaries are available for MacOSX and Linux.

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