This looks really interesting, Ammolite enables the transfer of structure related objects from Biotite to PyMOL for visualization, via PyMOL’s Python API:
- mport AtomArray and AtomArrayStack objects into PyMOL - without intermediate structure files
- Convert PyMOL objects into AtomArray and AtomArrayStack instances.
- Use Biotite’s boolean masks for atom selection in PyMOL.
- Display images rendered with PyMOL in Jupyter notebooks.
conda install -c conda-forge ammolite
Biotite package bundles popular tasks in computational molecular biology into a uniform Python library.