Macs in Chemistry

Insanely Great Science

Ammolite

 

This looks really interesting, Ammolite enables the transfer of structure related objects from Biotite to PyMOL for visualization, via PyMOL’s Python API:

  • mport AtomArray and AtomArrayStack objects into PyMOL - without intermediate structure files
  • Convert PyMOL objects into AtomArray and AtomArrayStack instances.
  • Use Biotite’s boolean masks for atom selection in PyMOL.
  • Display images rendered with PyMOL in Jupyter notebooks.

To install

conda install -c conda-forge ammolite

Biotite package bundles popular tasks in computational molecular biology into a uniform Python library.

ammolite

blog comments powered by Disqus