Chemical Computing Group have just released an up date to MOE, version 2015.10 includes:-

Protein-Protein Docking

• Generate docked poses using FFT followed by all atom minimization
• Define receptor and ligand sites to focus docking
• Automatically detect antibody CDR sites

Integrated Alignment, Consensus and Superposition in the Sequence Editor

• Manipulate multimeric protein sequences using split side-by-side Sequence Editor panes
• Use dendrograms to visualize pairwise similarity, identity and RMSD relationships
• Select residues based on plotted values using resizable sequence editor plots

Distributed Pharmacophore Searching

• Run pharmacophore searches on a cluster directly from MOE GUI
• Perform fast corporate database searches
• Access multiple databases stored on a central server

Covalent Docking and Electron Density Docking

• Use reaction-based organic transformations to covalently docking
• Minimize ligand strain energy while maximizing ligand fit to electron density
• Run docking through an enhanced streamlined scenario-based interface

Extended Hückel Descriptors and pKa Model

• Compute molecular properties such as logP, logS and molar refractivity
• Determine populations of ligand protonation states at a given pH
• Calculate the pKa and pKb of small molecules

13C NMR Analysis

• Apply QM conformation refinement to calculate 13C NMR shielding
• Convert computed shieldings and predict 13C NMR chemical shifts
• Compare computed chemical shifts to experimental shifts for structure determination

I'll write a review in the New Year.