Macs in Chemistry

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Chemistry Reference Resolver Safari Extension

I’ve added Chemistry Reference Resolver to the page of Safari Extensions. This adds a toolbar to your browser as well as adds a right-click menu option for reference resolving

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Applescript to report installed and enabled extensions

When Apple released Safari version 5 one of the most important new features was the support for extensions. Extensions are a great way to add features to Safari to personalise web browsing, they enable the addition of features that you find useful. There is a listing of Extensions that might be useful for chemists and judging by the weblogs these are of significant interest. If you are working with them however it is a bit of a pain to check which are installed and which are enabled. This applescript is a very neat way of getting a report, it also serves as a demonstration of how to link to shell scripts, in particular using the unix command cat, a standard Unix utility that concatenates and lists files, to generate the report.

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Safari Extensions

Just updated the chemistry Safari extensions so they are compatible with the upcoming Safari 5.2.

http://matt-swain.com/post/20715501529/chemistry-safari-extensions-just-updated-the

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ChEMBL Safari extension

ChEMBL Safari extension Read More...
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Building Safari Extension

A tutorial showing how to write Safari Extensions Read More...
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Safari extension for Opsin

The Unilever Centre for Molecular Science Informatics have been at the forfront at developing tools for the creation and curation of molecular data. OSCAR (Open Source Chemistry Analysis Routines) is software for the semantic annotation of chemistry papers a key part of this is Opsin a name to chemical structure converter. There is now a web interface to the program available and the web services can be accessed by anyone. Whilst this is very useful in its own right the beauty of such services is that other can build tools that access them.
There are a number
Safari Extensions described on this site that access similar services and with the help of Matt I'm happy to anounce a new addition.
The Safari Extension for Opsin (
download) allows the user to highlight a chemical name in a web page and then control click affords a dropdown menu, click on "Display ... using Opsin" and a small window will open displaying the chemical structure. What is particularly nice is that in addition to providing the structure in png format the same web service also provides the chemical structure in SMILES, InChi and CML format. If you click one of the buttons and the bottom of the structure window the structure will be downloaded in the appropriate format. You can read more about this extension here.


There is a full listing of the Safari Extensions here.
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ChemSpider Safari Extension Updated

If you go to the Safari Preferences and select the extensions tab you will see there is an update to the ChemSpider extension. This fixes a broken URL when linking to the ChemSpider website. Read More...
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Safari Updated

Apple have released a new version of Safari, possibly the most important feature is that Extensions are now enabled by default.

There is also a new
Extensions website.

There are a collection of extensions that might be of use to
Chemists here.

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ChemSpider Extension Update

The ChemSpider Extension has now been updated thanks to magnificent work by Matt at Mac OSX Tips, the small window that pops up containing the structure now has a number of additional options highlighted below, if you click on the “3D” button the display changes to a 3D rendering using the Java applet JMOL. If you now click on the “Zoom” button



The structure is displayed in a larger window as shown below. Clicking the “Save” button downloads the structure in .mol format.




Back to list of extensions
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Safari Extensions

A selection of extensions that should be useful for chemists.

Chemspider :- Displays structure of highlighted chemical/drug and links to ChemSpider page.
PubChem :- Search PubChem for the highlighted compound
eMolecules :- Search eMolecules for the highlighted compound
Chemicalize :- Submit the current URL to chemicalize.org
DrugBank :- Search DrugBank for the highlighted compound

Read More...
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Search ChemSpider Safari Extension

Chemistry Safari Extension Read More...
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